While Café Africa is headquartered in Switzerland, country offices are established wherever it supports the national coffee sector. Café Africa is currently successfully involved in three countries:
- Uganda (Cafe Africa Uganda)
- Tanzania (Cafe Africa Tanzania)
- Democratic Republic of Congo (Cafe Africa RDC)
Each country office is registered as a national non-profit organization in its host country. Each of them is self-supporting, developing its own programme and raising its own funding, and each is governed by its own board.